BioWeka 0.2

BioWeka 0.2 offers these features:

• Loaders and Savers for the sequence formats: FASTA, GenBank, EMBL and Swiss-Prot
• Classifiers based on sequence alignment: local and secondary structure element alignment
• Evaluators to transform (alignment) scores into (pseudo) likelihoods: average, sum and maximum score based as well as rank-based evaluators
• Filters for sequence data: RNA/DNA to amino acid translator, RNA to DNA transcriber, DNA/RNA complement and reverse complement translator, symbol counter, e.g. for codon usage analysis, sequence analysis, e.g. calculate average pK values or different amino acid indices based on the AAindex matrices
• Normalizers to normalize feature vectors, e.g. codon usage vectors: sum, min-max and standard distribution normalization

Feedback is welcome! Send it to bioweka-users@lists.sourceforge.net.

Martin Szugat (BioWeka main developer)