BioWeka 0.3 and XML-Stylesheets 0.2

BioWeka 0.3 and XML-Stylesheets 0.2 offer these new features:

• Classifying DNA/RNA sequences using a reimplementation of Eclat (based on codon usage and SVMs)
• Merge multiple data sets and store relation names in a nominal attribute
• Classification based on heuristic alignments using BLAST or PSI-BLAST
• Classification based on global alignments using an implementation of the Needleman-Wunsch algorithm, implemented by Andreas Dräger
• Cut DNA/RNA sequences after the first stop codon
• Calculate the open reading frames of DNA/RNA sequences
• Extracting internal microarray data from MAGE-ML files
• Load tab-delimited microarray data (e.g. TIGR's tav, mev and Stanford as well as spot format) into Weka
• Transform score alignments depending on the instance weight and the alignment rank
• Bug fixes for JAligner, Loader classes and many more

Feedback is welcome! Send it to bioweka-users@lists.sourceforge.net.

Martin Szugat (BioWeka main developer)